Comments on: Personal Genome Explorer http://www.scheidecker.net Sat, 17 May 2008 13:52:46 +0000 http://wordpress.org/?v=2.5.1 By: Science Surf » Personal Genome Explorer » Matthias Wjst http://www.scheidecker.net/personal-genome-explorer/#comment-243 Science Surf » Personal Genome Explorer » Matthias Wjst Thu, 24 Apr 2008 12:35:15 +0000 http://www.scheidecker.net/personal-genome-explorer/#comment-243 [...] 4/2008 reports a new software tool for DNA addicted people: the Personal Genome Explorer which is based on SNP annotation by SNPedia. So, what I tried to institutionalize on a sound level [...] [...] 4/2008 reports a new software tool for DNA addicted people: the Personal Genome Explorer which is based on SNP annotation by SNPedia. So, what I tried to institutionalize on a sound level [...]

]]> By: cariaso http://www.scheidecker.net/personal-genome-explorer/#comment-109 cariaso Mon, 25 Feb 2008 14:18:31 +0000 http://www.scheidecker.net/personal-genome-explorer/#comment-109 affy 6.0 data is supported just fine by promethease http://www.snpedia.com/index.php?title=Promethease affy 6.0 data is supported just fine by promethease
http://www.snpedia.com/index.php?title=Promethease

]]> By: Hans http://www.scheidecker.net/personal-genome-explorer/#comment-90 Hans Tue, 19 Feb 2008 10:28:39 +0000 http://www.scheidecker.net/personal-genome-explorer/#comment-90 This looks like a great tool! I have just ordered PG from both 23andme and deCODEme (I am an information junkie!), so I look forward to exploring them using this software. Just one wish: It would be nice to have a possibility to print the output (or some of it), insteading of just printing a screendump... This looks like a great tool! I have just ordered PG from both 23andme and deCODEme (I am an information junkie!), so I look forward to exploring them using this software.

Just one wish: It would be nice to have a possibility to print the output (or some of it), insteading of just printing a screendump…

]]> By: andrew http://www.scheidecker.net/personal-genome-explorer/#comment-10 andrew Mon, 28 Jan 2008 01:56:51 +0000 http://www.scheidecker.net/personal-genome-explorer/#comment-10 Sorry guys, I didn't have time to add support for importing Affymetrix data. I looked briefly for reference material or samples for the format, but I didn't find anything. Do you have any relevant links? Sorry guys, I didn’t have time to add support for importing Affymetrix data. I looked briefly for reference material or samples for the format, but I didn’t find anything. Do you have any relevant links?

]]> By: DHP http://www.scheidecker.net/personal-genome-explorer/#comment-8 DHP Tue, 22 Jan 2008 20:51:08 +0000 http://www.scheidecker.net/personal-genome-explorer/#comment-8 This is fantastic, I would like to request an extension to your unbelievable program to include analysis of Affymetrix SNP 6.0 data. This is by far the most widely used platform. Thanks This is fantastic, I would like to request an extension to your unbelievable program to include analysis of Affymetrix SNP 6.0 data. This is by far the most widely used platform. Thanks

]]> By: John http://www.scheidecker.net/personal-genome-explorer/#comment-7 John Tue, 22 Jan 2008 18:57:38 +0000 http://www.scheidecker.net/personal-genome-explorer/#comment-7 Will you consider an extension to include analysis of Affymetrix SNP Array 6.0 data? Should just involve parsing the rs_IDs and passing them into your SNPedia analysis. Will you consider an extension to include analysis of Affymetrix SNP Array 6.0 data? Should just involve parsing the rs_IDs and passing them into your SNPedia analysis.

]]> By: andrew http://www.scheidecker.net/personal-genome-explorer/#comment-6 andrew Tue, 22 Jan 2008 08:14:35 +0000 http://www.scheidecker.net/personal-genome-explorer/#comment-6 Tim, there isn't a way to open the file without the password; though if you manage to, please let me know, because that would be a bug! :) 23andme only started to officially support downloading the raw genome data today, so I will be removing support for downloading the data from their site directly in the next release, and adding support for the officially download-able data. I'm not aware of any way to crash the application; if you find a way to reproducibly crash it, please post it in the forum and I'll try to fix it. Tim, there isn’t a way to open the file without the password; though if you manage to, please let me know, because that would be a bug! :)

23andme only started to officially support downloading the raw genome data today, so I will be removing support for downloading the data from their site directly in the next release, and adding support for the officially download-able data.

I’m not aware of any way to crash the application; if you find a way to reproducibly crash it, please post it in the forum and I’ll try to fix it.

]]> By: tim martin http://www.scheidecker.net/personal-genome-explorer/#comment-5 tim martin Tue, 22 Jan 2008 04:38:14 +0000 http://www.scheidecker.net/personal-genome-explorer/#comment-5 After several failed attempts at downloading, I got the data and reviewed the traits. the programs seems a little fragile, in that it closes frequently. Perhaps it is just me. But, I saved the data, used a password. Now I cant open the file. I keyed it in the dark, so I could have misstyped. Any suggesttions on how to retrieve the password. Also data downloaded was primarily for the first three chromosomes. Is 23andme not done testing yet. Bye the way, thank you very much for the program After several failed attempts at downloading, I got the data and reviewed the traits. the programs seems a little fragile, in that it closes frequently. Perhaps it is just me. But, I saved the data, used a password. Now I cant open the file. I keyed it in the dark, so I could have misstyped. Any suggesttions on how to retrieve the password.

Also data downloaded was primarily for the first three chromosomes. Is 23andme not done testing yet.

Bye the way, thank you very much for the program

]]> By: Berci Mesko http://www.scheidecker.net/personal-genome-explorer/#comment-4 Berci Mesko Mon, 21 Jan 2008 23:23:51 +0000 http://www.scheidecker.net/personal-genome-explorer/#comment-4 Andrew, I'm astonished! This is a wonderful tool and should be used widely. I wrote a short post about it, I hope you don't mind. Andrew, I’m astonished! This is a wonderful tool and should be used widely. I wrote a short post about it, I hope you don’t mind.

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